An S4 class to store a parasitoid's life history for the endosymbiont model
Source:R/parasitoid.R
parasitoid-class.Rd
An S4 class to store a parasitoid's life history for the endosymbiont model
Slots
species
The name of the pest
fun_dev_para
Function describing temperature-dependent development of parasitoids
fun_para_scal
Function to modify development rate
fun_attack
Function describing attack rate as function of temperature
fun_handling
Function describing handling rate as function of temperature
susc_stage
Numeric vector defining the susceptible lifestages of the pest to parasitoids
introduction_date
Date parasitoids are introduced in YYYY-MM-DD format
introduction_n
Number of adult parasitoids introduced (assumed to all be female)
Examples
Wasp <- new("parasitoid",
species = "Diaeretiella rapae",
fun_dev_para = EndoSim:::fit_lactin(0.13048, 7.64313, -0.01308, 35.47),
fun_para_scal = EndoSim:::fit_null(1),
fun_attack = EndoSim:::fit_thirdpoly(0.00001084, -0.0021, -0.0272, -0.0145),
fun_handling = EndoSim:::fit_thirdpoly(0.298, 0.0035, 0.000256, 1.395, inv = T),
susc_stage = c(2, 3),
introduction_date = "2024-04-17",
introduction_n = 5)
Wasp
#> Parasitoid of the species Diaeretiella rapae
#> attacking pests of the following lifestages: 2 3
#> 5 individuals introduced on 2024-04-17